Cheap flights from Manila to Tokyo from $164

If you are unable to visit Tokyo during the month of September, then departing from Manila during the month June is also very affordable. Most momondo users find prices during this month for around $255.

Our data shows that Monday is the least expensive day to fly to Tokyo. Tickets to fly out on this day can be as low as $287. On the other hand, Friday is the most expensive day to depart from Manila because it is more convenient for both business and leisure travellers. As a result, prices tend to be around $359.

According to our data, the cheapest time of day to fly to Tokyo is in the morning. momondo users have found flights departing from Manila to Tokyo in the morning for as low as $288. Keep in mind that these prices may fluctuate based on what airline you choose and the time of year you plan to travel. At midday is when there is more demand to fly to Tokyo, so prices are often more expensive at around $363 per ticket.

Fly from Manila Ninoy Aquino Intl to Tokyo Narita for the best Manila Ninoy Aquino Intl - Tokyo flight prices

You are more likely to see cheaper flights to Tokyo from Manila when booking weeks ahead of your departure date. In general, you can expect to find flights to Tokyo for around $305 when searching weeks before you fly. However, flight prices might be lower outside of this timeframe. For example, people recently found flights to Tokyo from Manila for as low as $260 on momondo.

There are 2 cabin classes available to choose from on Manila Ninoy Aquino Intl to Tokyo flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

You could potentially save up to 80% on your flight if you consider stops on a Manila to Tokyo flight.

As of March 2026, prices for Manila to Tokyo flights are approximately 9% cheaper when compared to flights at the same time last year.

Jetstar Japan, Philippine Airlines, and Philippines AirAsia are the most popular carriers operating from Manila Ninoy Aquino Intl to Tokyo

Cebu Pacific, Philippines AirAsia and Philippine Airlines are the top three most popular airlines that fly to Tokyo from Manila according to our data. Cebu Pacific is the first choice among our users, with 39% of people opting to fly with this airline when travelling to Tokyo. Keep in mind that there are 8 different airlines that fly to Tokyo on a routine basis, so you have a few additional options to choose from.

Historically, on average around 10% of flights between Manila and Tokyo have experienced a delay on any given week. The average delay length over the past 12 months has been 124 minutes.

Generally, flights departing in the morning tend to experience fewer delays. Flights departing at night have, in the past, seen delays more frequently in comparison.

Thursday is statistically the day of the week that experiences the fewest delays on this flight route. Friday has historically seen more delays on average compared to the rest of the week.

According to our data, ANA have had the fewest delays on this route over the last 12 months, with about 6% of their flights experiencing any sort of delay.

The number of flights available between Manila and Tokyo is 22 per day as of March 2026. The most frequent departure time is 09:00, with 50% of daily flights leaving at midday.

As of March 2026, there are 160 flights per week flying from Manila to Tokyo. The most common day of the week flights depart is Wed, with 16% of flights taking off on this day.